HL_8B2L_129

3D structure

PDB id

8B2L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the plant 80S ribosome

Experimental method

ELECTRON MICROSCOPY

Resolution

2.2 Å

Loop

Sequence

G(PSU)UAUCUUU

Length

9 nucleotides

Bulged bases

8B2L|1|A3|U|1691

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B2L_129 not in the Motif Atlas

Homologous match to HL_8P9A_148

Geometric discrepancy: 0.3055

The information below is about HL_8P9A_148

Detailed Annotation

Pseudoknot geometry

Broad Annotation

Pseudoknot geometry

Motif group

HL_22758.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8B2L|1|A3|G|1684
8B2L|1|A3|PSU|1685
8B2L|1|A3|U|1686
8B2L|1|A3|A|1687
8B2L|1|A3|U|1688
8B2L|1|A3|C|1689
8B2L|1|A3|U|1690
8B2L|1|A3|U|1691
8B2L|1|A3|U|1692

Current chains

Chain A3

25S rRNA

Nearby chains

Chain H3

Ribosomal protein L19

Chain K3

60S ribosomal protein L22-2-like