HL_8B5L_012

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GACGCCUCGCCGGCGGGCGCGACCCC

Length

26 nucleotides

Bulged bases

8B5L|1|5|C|791, 8B5L|1|5|C|797

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B5L|1|5|G|756
8B5L|1|5|A|757
8B5L|1|5|C|758
8B5L|1|5|G|759
8B5L|1|5|C|760
8B5L|1|5|C|761
8B5L|1|5|U|762
8B5L|1|5|C|763
8B5L|1|5|G|764
8B5L|1|5|C|765
8B5L|1|5|C|784
8B5L|1|5|G|785
8B5L|1|5|G|786
8B5L|1|5|C|787
8B5L|1|5|G|788
8B5L|1|5|G|789
8B5L|1|5|G|790
8B5L|1|5|C|791
8B5L|1|5|G|792
8B5L|1|5|C|793
8B5L|1|5|G|794
8B5L|1|5|A|795
8B5L|1|5|C|796
8B5L|1|5|C|797
8B5L|1|5|C|798
8B5L|1|5|C|799

Current chains

Chain 5

28S rRNA

Nearby chains

Chain H

60S ribosomal protein L9