RNA 3D Hub //

8B5L Hairpin, Internal, and multi-helix Junction Loop Motifs

Download loops

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
HL_8B5L_0011/5/37:44No text annotation
geometric
HL_5TBW_001
NA
HL_8B5L_0021/5/68:73No text annotation
homologous
HL_8C3A_002
NA
HL_8B5L_0031/5/89:95No text annotation
homologous
HL_8C3A_003
NA
HL_8B5L_0041/5/131:137No text annotation
geometric
HL_7RQB_011
NA
HL_8B5L_0051/5/204:211T-loop with 2 stacked bulged bases
homologous
HL_5TBW_005
NA
HL_8B5L_0061/5/222:226No text annotation
homologous
HL_5TBW_006
NA
HL_8B5L_0071/5/230:238T-loop with unstacked turn
homologous
HL_8C3A_007
NA
HL_8B5L_0081/5/289:298No text annotation
homologous
HL_8C3A_008
NA
HL_8B5L_0091/5/314:323Pseudoknot geometry
homologous
HL_8C3A_009
NA
HL_8B5L_0101/5/368:373GNRA
homologous
HL_8C3A_010
NA
HL_8B5L_0801/5/393:398GNRA
homologous
HL_8C3A_011
NA
HL_8B5L_0131/5/862:870No text annotation
HL_8B5L_0141/5/1069:1074Mini UNCG
geometric
HL_6AAX_001
HL_12626.1
HL_8B5L_0811/5/1261:1270T-loop with 2 stacked bulged bases
homologous
HL_8C3A_014
NA
HL_8B5L_0821/5/1308:1317No text annotation
HL_8B5L_0181/5/1333:1338GNRA
homologous
HL_8C3A_016
NA
HL_8B5L_0201/5/1392:1403Purine riboswitch
geometric
HL_4LX6_002
HL_78364.1
HL_8B5L_0211/5/1434:1441No text annotation
homologous
HL_8C3A_018
NA
HL_8B5L_0221/5/1516:1521GNRA
homologous
HL_5TBW_019
NA
HL_8B5L_0231/5/1548:1557No text annotation
homologous
HL_5TBW_020
NA
HL_8B5L_0241/5/1582:1590No text annotation
homologous
HL_8C3A_021
NA
HL_8B5L_0251/5/1630:1635Externally structured
homologous
HL_8C3A_022
NA
HL_8B5L_0271/5/1755:1762T-loop related
geometric
HL_5J7L_024
NA
HL_8B5L_0281/5/1803:1809GNRA
geometric
HL_5TBW_025
NA
HL_8B5L_0291/5/1825:1832No text annotation
homologous
HL_5TBW_026
NA
HL_8B5L_0301/5/1917:1927No text annotation
homologous
HL_8C3A_027
NA
HL_8B5L_0311/5/1945:1952GNRA wlth tandem sheared
homologous
HL_8C3A_028
NA
HL_8B5L_0331/5/2160:2165GNRA
homologous
HL_8C3A_030
NA
HL_8B5L_0341/5/2219:2227T-loop with 2 stacked bulged bases
homologous
HL_8C3A_031
NA
HL_8B5L_0351/5/2263:2269Pseudoknot geometry with 3' bulge
homologous
HL_5TBW_032
NA
HL_8B5L_0361/5/2301:2306GNRA variation
homologous
HL_8C3A_033
NA
HL_8B5L_0381/5/2366:2375No text annotation
geometric
HL_5TBW_035
NA
HL_8B5L_0401/5/2421:2426GNRA
homologous
HL_8C3A_036
NA
HL_8B5L_0411/5/2467:2475No text annotation
homologous
HL_8C3A_037
NA
HL_8B5L_0421/5/2507:2513Other HL
geometric
HL_4V9F_039
HL_67772.1
HL_8B5L_0431/5/2548:2553No text annotation
geometric
HL_2Y9H_003
HL_75660.6
HL_8B5L_0441/5/2581:2585No text annotation
homologous
HL_8C3A_040
NA
HL_8B5L_0451/5/2635:2642No text annotation
homologous
HL_5TBW_041
NA
HL_8B5L_0461/5/2653:2659GNRA
homologous
HL_5TBW_042
NA
HL_8B5L_0471/5/2715:2720No text annotation
geometric
HL_7RQB_042
NA
HL_8B5L_0491/5/3346:3350No text annotation
homologous
HL_8C3A_045
NA
HL_8B5L_0501/5/3371:3381No text annotation
homologous
HL_8C3A_046
NA
HL_8B5L_0511/5/3400:3406GNRA
homologous
HL_8C3A_047
NA
HL_8B5L_0831/5/3456:3461GNRA
homologous
HL_8P9A_159
HL_34789.1
HL_8B5L_0541/5/3528:3536No text annotation
homologous
HL_8C3A_050
NA
HL_8B5L_0551/5/3605:3614No text annotation
homologous
HL_8C3A_051
NA
HL_8B5L_0571/5/3939:3947No text annotation
homologous
HL_8C3A_055
NA
HL_8B5L_0581/5/3956:3968No text annotation
homologous
HL_8C3A_056
NA
HL_8B5L_0591/5/3996:4004No text annotation
homologous
HL_8C3A_057
NA
HL_8B5L_0601/5/4016:4023Pseudoknot geometry
homologous
HL_5TBW_057
NA
HL_8B5L_0611/5/4047:4055No text annotation
homologous
HL_8C3A_059
NA
HL_8B5L_0621/5/4067:4072GNRA
homologous
HL_8C3A_060
NA
HL_8B5L_0631/5/4098:4108tRNA anticodon loop
geometric
HL_8H1B_001
HL_46665.1
HL_8B5L_0641/5/4163:4171No text annotation
homologous
HL_8C3A_062
NA
HL_8B5L_0651/5/4220:4227No text annotation
homologous
HL_8C3A_063
NA
HL_8B5L_0661/5/4243:4249No text annotation
geometric
HL_5TBW_063
NA
HL_8B5L_0671/5/4286:4291GNRA
homologous
HL_8C3A_065
NA
HL_8B5L_0681/5/4349:4354GNRA
geometric
HL_7RQB_064
NA
HL_8B5L_0691/5/4392:4397Ribsomal LSU H95
homologous
HL_8C3A_067
NA
HL_8B5L_0701/5/4434:4448No text annotation
homologous
HL_8C3A_068
NA
HL_8B5L_0711/5/4645:4654No text annotation
geometric
HL_2Y9H_003
HL_75660.6
HL_8B5L_0721/5/4714:4722No text annotation
homologous
HL_8C3A_071
NA
HL_8B5L_0841/7/32:45No text annotation
homologous
HL_8C3A_228
NA
HL_8B5L_0741/7/36:41No text annotation
geometric
HL_5TBW_185
NA
HL_8B5L_0751/7/86:91GNRA
homologous
HL_5TBW_186
NA
HL_8B5L_0761/8/47:56Pseudoknot with intercalation
geometric
HL_7A0S_001
HL_17803.1
HL_8B5L_0851/8/108:111No text annotation
HL_8B5L_0791/8/121:129tRNA anticodon loop
geometric
HL_2D6F_005
HL_91620.1

Problematic loops

#loop idProblemSequence
HL_8B5L_011No text annotation
HL_8B5L_012No text annotation
HL_8B5L_015No text annotation
HL_8B5L_016No text annotation
HL_8B5L_017No text annotation
HL_8B5L_019No text annotation
HL_8B5L_026GNRA
HL_8B5L_032No text annotation
HL_8B5L_037Externally structured
HL_8B5L_039GNRA
HL_8B5L_048No text annotation
HL_8B5L_052No text annotation
HL_8B5L_053No text annotation
HL_8B5L_056No text annotation
HL_8B5L_073Mini UNCG
HL_8B5L_077No text annotation
HL_8B5L_078No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
IL_8B5L_0011/5/6:7,
1/8/149:151		Single bulged C
homologous
IL_8C3A_002
NA
IL_8B5L_1751/5/12:14,
1/8/143:144		Single bulged U
homologous
IL_8C3A_003
NA
IL_8B5L_0031/5/16:18,
1/8/139:141		Isolated non-canonical cWW pair
geometric
IL_1Y27_001
NA
IL_8B5L_0041/5/26:27,
1/5/55:57		No text annotation
homologous
IL_8C3A_004
NA
IL_8B5L_0051/5/30:37,
1/5/44:52		9x8 Sarcin-Ricin; G-bulge
geometric
IL_4WF9_008
IL_93502.1
IL_8B5L_0061/5/81:88,
1/5/96:102		No text annotation
homologous
IL_8C3A_006
NA
IL_8B5L_0071/5/118:121,
1/5/152:153		Major groove intercalation
geometric
IL_1NBS_009
IL_71421.1
IL_8B5L_1761/5/118:122,
1/5/147:153		No text annotation
IL_8B5L_0081/5/121:122,
1/5/147:152		No text annotation
homologous
IL_8C3A_007
NA
IL_8B5L_0091/5/125:126,
1/5/142:144		Single bulged C
geometric
IL_1DQF_001
NA
IL_8B5L_0101/5/168:173,
1/5/263:267		No text annotation
IL_8B5L_0121/5/184:189,
1/5/252:253		No text annotation
geometric
IL_6JOO_001
NA
IL_8B5L_0131/5/195:196,
1/5/244:246		Single bulged C
geometric
IL_1DQF_001
NA
IL_8B5L_0141/5/199:201,
1/5/214:215		Single bulged U
homologous
IL_8C3A_013
NA
IL_8B5L_0151/5/339:342,
1/8/32:33		Minor groove platform, major groove intercalation
geometric
IL_1U9S_005
NA
IL_8B5L_0161/5/348:350,
1/8/25:26		Single bulged A
homologous
IL_8C3A_014
NA
IL_8B5L_0171/5/387:390,
1/5/401:414		No text annotation
homologous
IL_5TBW_014
NA
IL_8B5L_0181/5/415:421,
1/8/13:19		Triple sheared with non-canonical cWW
homologous
IL_5TBW_015
NA
IL_8B5L_0191/5/443:446,
1/5/1244:1248		No text annotation
geometric
IL_7MLW_007
NA
IL_8B5L_0201/5/448:450,
1/5/1241:1242		Single bulged C
geometric
IL_4C7O_003
NA
IL_8B5L_0211/5/459:460,
1/5/689:691		Single bulged C
geometric
IL_1S03_002
IL_05642.1
IL_8B5L_0221/5/462:464,
1/5/685:687		Isolated non-canonical cWW pair
geometric
IL_5TBW_042
NA
IL_8B5L_0231/5/466:472,
1/5/676:683		No text annotation
IL_8B5L_0241/5/488:489,
1/5/659:663		Multiple bulged bases
geometric
IL_1R3E_002
IL_44609.1
IL_8B5L_0251/5/492:494,
1/5/655:656		Single bulged U
geometric
IL_4WF9_030
IL_97561.1
IL_8B5L_0261/5/498:500,
1/5/650:651		No text annotation
IL_8B5L_0271/5/501:506,
1/5/648:649		Multiple bulged bases
geometric
IL_1R3E_002
IL_44609.1
IL_8B5L_0281/5/510:512,
1/5/643:644		Single bulged A
geometric
IL_6WPI_001
IL_14190.1
IL_8B5L_0301/5/703:704,
1/5/1230:1232		Single bulged G
geometric
IL_4LFB_036
IL_28408.1
IL_8B5L_0311/5/717:718,
1/5/842:845		Multiple bulged bases
geometric
IL_7V9E_001
NA
IL_8B5L_0321/5/721:725,
1/5/838:839		No text annotation
IL_8B5L_0331/5/726:729,
1/5/827:837		No text annotation
IL_8B5L_0351/5/740:747,
1/5/808:816		No text annotation
geometric
IL_5TBW_020
NA
IL_8B5L_0361/5/988:989,
1/5/1123:1125		Single bulged A
geometric
IL_2VPL_002
IL_14190.1
IL_8B5L_0381/5/997:999,
1/5/1104:1108		Isolated cWS basepair
geometric
IL_4TS2_003
NA
IL_8B5L_0391/5/1001:1002,
1/5/1100:1102		Single bulged C
geometric
IL_3SN2_001
NA
IL_8B5L_0421/5/1064:1066,
1/5/1077:1079		Isolated cWH basepair
geometric
IL_3W3S_003
NA
IL_8B5L_0441/5/1301:1304,
1/5/1323:1326		No text annotation
IL_8B5L_1771/5/1301:1305,
1/5/1320:1326		No text annotation
IL_8B5L_0451/5/1304:1305,
1/5/1320:1323		Major groove intercalation
geometric
IL_1U9S_003
NA
IL_8B5L_0461/5/1380:1384,
1/5/1410:1415		Triple sheared related
geometric
IL_4V9F_018
IL_67427.1
IL_8B5L_0471/5/1386:1389,
1/5/1405:1408		Double sheared
geometric
IL_4KZD_002
IL_58355.1
IL_8B5L_0481/5/1422:1423,
1/5/1451:1453		Single bulged A
homologous
IL_8C3A_026
NA
IL_8B5L_0491/5/1429:1431,
1/5/1444:1445		Single stack bend
geometric
IL_7A0S_005
IL_15011.1
IL_8B5L_1781/5/1475:1477,
1/5/1610:1612		Isolated non-canonical cWW pair
homologous
IL_8C3A_029
NA
IL_8B5L_1791/5/1477:1481,
1/5/1603:1610		No text annotation
homologous
IL_8C3A_030
NA
IL_8B5L_0511/5/1505:1506,
1/5/1531:1533		Single bulged G
homologous
IL_8C3A_032
NA
IL_8B5L_0521/5/1506:1510,
1/5/1527:1531		Triple sheared
geometric
IL_4V9F_027
IL_15190.1
IL_8B5L_1801/5/1541:1544,
1/5/1560:1562		Major groove platform with extra cWW
homologous
IL_8C3A_034
NA
IL_8B5L_0541/5/1545:1547,
1/5/1558:1559		Single bulged U
homologous
IL_8C3A_035
NA
IL_8B5L_0551/5/1579:1581,
1/5/1591:1595		Multiple bulged bases
geometric
IL_5TBW_033
NA
IL_8B5L_0561/5/1626:1628,
1/5/1637:1639		Isolated non-canonical cWW pair
homologous
IL_8C3A_037
NA
IL_8B5L_0571/5/1641:1643,
1/5/1787:1790		No text annotation
IL_8B5L_0591/5/1662:1664,
1/5/1777:1778		Single bulged G
homologous
IL_8C3A_040
NA
IL_8B5L_1811/5/1671:1676,
1/5/1731:1736		No text annotation
IL_8B5L_0611/5/1676:1677,
1/5/1729:1731		Minor groove platform
homologous
IL_8C3A_042
NA
IL_8B5L_0621/5/1678:1683,
1/5/1725:1728		C-loop with bulged stacked A's
homologous
IL_8C3A_043
NA
IL_8B5L_0631/5/1685:1688,
1/5/1720:1723		Tandem non-canonical cWW pairs
geometric
IL_5TBW_041
NA
IL_8B5L_0641/5/1688:1690,
1/5/1718:1720		Isolated non-canonical cWW pair
homologous
IL_8C3A_045
NA
IL_8B5L_0651/5/1692:1695,
1/5/1715:1716		Major groove platform
geometric
IL_4WF9_026
IL_48076.7
IL_8B5L_0671/5/1753:1755,
1/5/1762:1763		Single bulged G
homologous
IL_8C3A_048
NA
IL_8B5L_1821/5/1797:1799,
1/5/1813:1815		Isolated non-canonical cWW pair
homologous
IL_8P9A_274
IL_01003.1
IL_8B5L_1841/5/1844:1848,
1/5/2006:2010		UAA/GAN
homologous
IL_8C3A_051
NA
IL_8B5L_0711/5/1850:1857,
1/5/2003:2004		SSU/LSU pseudoknot
geometric
IL_7RQB_037
NA
IL_8B5L_0721/5/1857:1859,
1/5/2002:2003		No text annotation
IL_8B5L_0731/5/1859:1861,
1/5/2001:2002		No text annotation
IL_8B5L_0741/5/1865:1872,
1/5/1992:1997		No text annotation
geometric
IL_5TBW_051
NA
IL_8B5L_0751/5/1872:1883,
1/5/1977:1992		No text annotation
geometric
IL_5TBW_052
NA
IL_8B5L_0761/5/1885:1887,
1/5/1974:1975		Single bulged U
homologous
IL_5TBW_053
NA
IL_8B5L_0771/5/1896:1904,
1/5/1961:1965		Kink-turn
homologous
IL_5TBW_054
NA
IL_8B5L_0781/5/1912:1916,
1/5/1928:1932		No text annotation
homologous
IL_8C3A_058
NA
IL_8B5L_0791/5/1940:1944,
1/5/1953:1955		Major groove platform with extra cWW
homologous
IL_8C3A_059
NA
IL_8B5L_0801/5/2022:2024,
1/5/2115:2116		Single bulged U
geometric
IL_4LFB_046
IL_97561.1
IL_8B5L_0811/5/2133:2135,
1/5/2185:2188		No text annotation
homologous
IL_8C3A_061
NA
IL_8B5L_0821/5/2142:2144,
1/5/2177:2178		Single bulged A
homologous
IL_8C3A_062
NA
IL_8B5L_0831/5/2145:2152,
1/5/2172:2176		Kink-turn
homologous
IL_5TBW_059
NA
IL_8B5L_0841/5/2155:2157,
1/5/2168:2169		Single bulged A
geometric
IL_7RQB_033
NA
IL_8B5L_1851/5/2201:2207,
1/5/3590:3595		No text annotation
homologous
IL_8C3A_065
NA
IL_8B5L_0861/5/2258:2262,
1/5/2270:2272		C-loop
geometric
IL_7A0S_047
IL_06671.1
IL_8B5L_0871/5/2289:2293,
1/5/2352:2357		UAA/GAN
homologous
IL_8C3A_067
NA
IL_8B5L_0881/5/2320:2322,
1/5/2342:2343		Single stack bend
geometric
IL_7RQB_058
NA
IL_8B5L_0901/5/2385:2390,
1/5/2615:2617		No text annotation
homologous
IL_8CRE_069
NA
IL_8B5L_0911/5/2392:2393,
1/5/2611:2613		Single bulged U
geometric
IL_2A64_002
NA
IL_8B5L_0921/5/2432:2436,
1/5/2595:2599		Triple sheared
homologous
IL_5TBW_067
NA
IL_8B5L_0931/5/2456:2457,
1/5/2567:2569		Single bulged C
homologous
IL_8C3A_075
NA
IL_8B5L_0941/5/2457:2458,
1/5/2565:2567		Single stack bend
geometric
IL_4WF9_007
IL_15011.1
IL_8B5L_0951/5/2489:2491,
1/5/2528:2531		Isolated tHS basepair with bulges
geometric
IL_4V9F_076
IL_87316.1
IL_8B5L_0961/5/2494:2496,
1/5/2524:2525		Single bulged G
geometric
IL_3NDB_004
NA
IL_8B5L_0971/5/2499:2505,
1/5/2515:2521		Kink-turn
homologous
IL_5TBW_073
NA
IL_8B5L_0981/5/2547:2548,
1/5/2553:2555		No text annotation
IL_8B5L_0991/5/2675:2681,
1/5/3582:3585		No text annotation
homologous
IL_5TBW_074
NA
IL_8B5L_1001/5/2687:2689,
1/5/3574:3576		No text annotation
homologous
IL_8C3A_081
NA
IL_8B5L_1011/5/2690:2693,
1/5/3572:3573		Major groove platform; stack outside cWW
geometric
IL_5TBW_076
NA
IL_8B5L_1861/5/2690:2698,
1/5/3569:3573		No text annotation
homologous
IL_8C3A_484
NA
IL_8B5L_1021/5/2693:2698,
1/5/3569:3572		No text annotation
homologous
IL_8C3A_083
NA
IL_8B5L_1031/5/2710:2715,
1/5/2720:2726		No text annotation
homologous
IL_8C3A_084
NA
IL_8B5L_1041/5/2732:2734,
1/5/3342:3344		Isolated non-canonical cWW pair
homologous
IL_8C3A_085
NA
IL_8B5L_1051/5/2739:2740,
1/5/3334:3337		No text annotation
homologous
IL_8C3A_086
NA
IL_8B5L_1061/5/3364:3365,
1/5/3559:3561		Single bulged A
homologous
IL_5TBW_082
NA
IL_8B5L_1071/5/3392:3397,
1/5/3409:3416		No text annotation
homologous
IL_8C3A_088
NA
IL_8B5L_1081/5/3432:3435,
1/5/3481:3482		No text annotation
homologous
IL_8C3A_089
NA
IL_8B5L_1091/5/3436:3437,
1/5/3477:3480		Multiple bulged bases
homologous
IL_8C3A_090
NA
IL_8B5L_1101/5/3440:3442,
1/5/3473:3474		Single stack bend
homologous
IL_8C3A_091
NA
IL_8B5L_1111/5/3442:3446,
1/5/3471:3473		No text annotation
IL_8B5L_1871/5/3447:3453,
1/5/3464:3470		No text annotation
homologous
IL_8P9A_316
IL_65359.1
IL_8B5L_1131/5/3512:3513,
1/5/3543:3546		Bulged stacked bases
geometric
IL_5TBW_089
NA
IL_8B5L_1881/5/3513:3524,
1/5/3540:3543		No text annotation
homologous
IL_8C3A_095
NA
IL_8B5L_1151/5/3627:3630,
1/5/4309:4311		No text annotation
homologous
IL_8P9A_319
IL_75527.1
IL_8B5L_1171/5/3632:3634,
1/5/4304:4307		No text annotation
homologous
IL_8C3A_097
NA
IL_8B5L_1181/5/3645:3647,
1/5/4134:4135		Single bulged U
homologous
IL_8C3A_098
NA
IL_8B5L_1191/5/3648:3649,
1/5/4130:4133		Minor groove platform
homologous
IL_5TBW_094
NA
IL_8B5L_1201/5/3659:3661,
1/5/3927:3930		No text annotation
homologous
IL_8C3A_100
NA
IL_8B5L_1231/5/3810:3816,
1/5/3907:3910		No text annotation
homologous
IL_8C3A_106
NA
IL_8B5L_1261/5/3937:3938,
1/5/3948:3950		Single bulged A
homologous
IL_8C3A_107
NA
IL_8B5L_1271/5/3989:3991,
1/5/4009:4013		No text annotation
homologous
IL_8C3A_108
NA
IL_8B5L_1901/5/4037:4039,
1/5/4063:4064		No text annotation
IL_8B5L_1291/5/4041:4044,
1/5/4058:4061		Tandem non-canonical cWW pairs
homologous
IL_8P9A_327
IL_15225.1
IL_8B5L_1301/5/4093:4096,
1/5/4110:4111		Single stack bend
geometric
IL_5J7L_032
NA
IL_8B5L_1911/5/4146:4147,
1/5/4188:4190		Major groove platform
homologous
IL_8P9A_329
IL_48076.7
IL_8B5L_1921/5/4147:4151,
1/5/4185:4188		No text annotation
homologous
IL_8C3A_111
NA
IL_8B5L_1321/5/4151:4153,
1/5/4181:4185		Major groove minor groove platform with extra cWW
homologous
IL_5TBW_105
NA
IL_8B5L_1331/5/4158:4162,
1/5/4172:4176		No text annotation
homologous
IL_8C3A_114
NA
IL_8B5L_1341/5/4199:4200,
1/5/4272:4274		Major groove platform
homologous
IL_8C3A_115
NA
IL_8B5L_1351/5/4202:4204,
1/5/4266:4270		Isolated non-canonical cWW with bulges
geometric
IL_5TBW_108
NA
IL_8B5L_1361/5/4204:4205,
1/5/4263:4266		No text annotation
homologous
IL_8C3A_117
NA
IL_8B5L_1371/5/4212:4214,
1/5/4235:4237		Isolated non-canonical cWW pair
geometric
IL_5TBW_110
NA
IL_8B5L_1931/5/4212:4216,
1/5/4231:4237		No text annotation
IL_8B5L_1381/5/4214:4216,
1/5/4231:4235		No text annotation
geometric
IL_3DD2_004
NA
IL_8B5L_1401/5/4241:4243,
1/5/4249:4251		Isolated non-canonical cWW pair
homologous
IL_8C3A_120
NA
IL_8B5L_1421/5/4283:4284,
1/5/4293:4295		Single bulged A
geometric
IL_7RQB_101
NA
IL_8B5L_1431/5/4326:4328,
1/5/4467:4469		No text annotation
geometric
IL_3ICQ_003
NA
IL_8B5L_1441/5/4328:4331,
1/5/4463:4467		Double sheared
geometric
IL_5J7L_256
NA
IL_8B5L_1941/5/4336:4338,
1/5/4364:4366		Isolated non-canonical cWW pair
homologous
IL_8P9A_343
IL_71625.1
IL_8B5L_1451/5/4342:4349,
1/5/4354:4360		8x7 Sarcin-Ricin; G-bulge
homologous
IL_8C3A_125
NA
IL_8B5L_1471/5/4370:4375,
1/5/4415:4419		No text annotation
IL_8B5L_1951/5/4378:4383,
1/5/4408:4412		No text annotation
homologous
IL_8P9A_346
IL_98200.1
IL_8B5L_1491/5/4384:4386,
1/5/4405:4407		Isolated cWH basepair
geometric
IL_3R1C_012
IL_10892.1
IL_8B5L_1501/5/4387:4388,
1/5/4401:4404		Multiple bulged bases
homologous
IL_5TBW_119
NA
IL_8B5L_1511/5/4426:4431,
1/5/4451:4456		UAA/GAN with extra cWW
geometric
IL_5J7L_350
NA
IL_8B5L_1531/5/4490:4493,
1/5/4693:4696		Tandem non-canonical cWW pairs
geometric
IL_4V88_438
NA
IL_8B5L_1541/5/4503:4512,
1/5/4608:4616		No text annotation
IL_8B5L_1551/5/4516:4518,
1/5/4602:4604		Isolated non-canonical cWW pair
geometric
IL_3RG5_002
IL_68118.1
IL_8B5L_1961/5/4516:4520,
1/5/4601:4604		No text annotation
IL_8B5L_1561/5/4518:4520,
1/5/4601:4602		Multiple bulged bases
geometric
IL_7OS0_002
IL_71421.1
IL_8B5L_1571/5/4624:4627,
1/5/4670:4673		Tandem non-canonical cWW pairs
geometric
IL_4K27_003
NA
IL_8B5L_1581/5/4630:4635,
1/5/4663:4667		No text annotation
IL_8B5L_1601/5/4711:4714,
1/5/4722:4725		Tandem non-canonical cWW pairs
geometric
IL_5TBW_129
NA
IL_8B5L_1611/5/4731:4733,
1/5/4796:4798		Isolated non-canonical cWW pair
geometric
IL_3D0U_006
IL_01003.1
IL_8B5L_1621/5/4735:4736,
1/5/4792:4794		Single bulged C
geometric
IL_1KUQ_002
IL_05642.1
IL_8B5L_1631/5/4739:4741,
1/5/4784:4789		Isolated non-canonical cWW pair
homologous
IL_5TBW_132
NA
IL_8B5L_1641/5/4742:4748,
1/5/4778:4783		No text annotation
IL_8B5L_1651/5/4751:4753,
1/5/4774:4775		Single bulged U
homologous
IL_8C3A_140
NA
IL_8B5L_1661/5/4753:4756,
1/5/4771:4774		Double sheared; A in syn
homologous
IL_8C3A_141
NA
IL_8B5L_1671/7/15:16,
1/7/62:64		Single bulged A
homologous
IL_5TBW_372
NA
IL_8B5L_1681/7/21:27,
1/7/52:57		Minor groove platform related
homologous
IL_5TBW_373
NA
IL_8B5L_1691/7/28:29,
1/7/48:51		Major groove minor groove platform; mini C-loop
homologous
IL_7RQB_113
NA
IL_8B5L_1701/7/32:36,
1/7/41:45		Symmetric double minor groove platform
homologous
IL_7RQB_114
NA
IL_8B5L_1711/7/71:78,
1/7/98:104		8x7 Sarcin-Ricin; G-bulge
homologous
IL_5TBW_377
NA
IL_8B5L_1721/7/79:81,
1/7/95:97		Isolated non-canonical cWW pair
geometric
IL_4V88_470
NA
IL_8B5L_1731/7/82:85,
1/7/92:94		Isolated non-canonical cWW pair
homologous
IL_5TBW_378
NA
IL_8B5L_1741/8/64:66,
1/8/92:95		Isolated non-canonical cWW pair
homologous
IL_5TBW_145
NA

Problematic loops

#loop idProblemSequence
IL_8B5L_002Isolated non-canonical cWW pair
IL_8B5L_011Single stack bend
IL_8B5L_029Multiple bulged bases
IL_8B5L_034No text annotation
IL_8B5L_037No text annotation
IL_8B5L_040Single stack bend
IL_8B5L_041No text annotation
IL_8B5L_043Isolated non-canonical cWW pair
IL_8B5L_050No text annotation
IL_8B5L_053No text annotation
IL_8B5L_058No text annotation
IL_8B5L_0607x7 Sarcin-Ricin with intercalated A; G-bulge
IL_8B5L_066Isolated non-canonical cWW pair
IL_8B5L_068Tandem non-canonical cWW pairs
IL_8B5L_183No text annotation
IL_8B5L_069Tandem non-canonical cWW pairs
IL_8B5L_070No text annotation
IL_8B5L_085Isolated non-canonical cWW pair
IL_8B5L_089Isolated non-canonical cWW pair
IL_8B5L_112No text annotation
IL_8B5L_114No text annotation
IL_8B5L_116Isolated non-canonical cWW pair
IL_8B5L_121Single stack bend
IL_8B5L_122No text annotation
IL_8B5L_124Isolated non-canonical cWW pair
IL_8B5L_189No text annotation
IL_8B5L_125Tandem non-canonical cWW pairs
IL_8B5L_128Decoding loop related
IL_8B5L_131No text annotation
IL_8B5L_139Isolated non-canonical cWW pair
IL_8B5L_141No text annotation
IL_8B5L_146Stack and bulge
IL_8B5L_148No text annotation
IL_8B5L_152No text annotation
IL_8B5L_159No text annotation

Valid loops

3DLoop idLocationAnnotation; motif groupMapped info
J3_8B5L_0011/5/112:116,
1/5/155:160,
1/5/275:278		No text annotation
J3_8B5L_0191/5/351:367,
1/5/374:379,
1/8/21:24		No text annotation
homologous
J3_8P9A_045
J3_07616.1
J3_8B5L_0021/5/380:387,
1/5/414:415,
1/8/19:20		No text annotation
homologous
J3_5TBW_002
NA
J3_8B5L_0201/5/380:390,
1/5/401:415,
1/8/19:20		No text annotation
homologous
J3_8C3A_049
NA
J3_8B5L_0211/5/451:455,
1/5/695:699,
1/5/1236:1240		No text annotation
J3_8B5L_0031/5/1486:1492,
1/5/1577:1579,
1/5/1595:1598		No text annotation
homologous
J3_8C3A_003
NA
J3_8B5L_0041/5/1500:1503,
1/5/1535:1539,
1/5/1564:1569		No text annotation
homologous
J3_5TBW_005
NA
J3_8B5L_0221/5/1665:1666,
1/5/1741:1745,
1/5/1771:1776		No text annotation
homologous
J3_8P9A_051
J3_84137.1
J3_8B5L_0051/5/1908:1911,
1/5/1933:1940,
1/5/1955:1957		No text annotation
J3_8B5L_0061/5/2236:2242,
1/5/2648:2650,
1/5/2662:2665		No text annotation
homologous
J3_8C3A_006
NA
J3_8B5L_0071/5/2245:2248,
1/5/2628:2634,
1/5/2643:2645		No text annotation
homologous
J3_8C3A_007
NA
J3_8B5L_0081/5/2283:2288,
1/5/2358:2362,
1/5/2379:2380		No text annotation
homologous
J3_5TBW_010
NA
J3_8B5L_0231/5/2294:2299,
1/5/2308:2319,
1/5/2344:2351		No text annotation
J3_8B5L_0091/5/2394:2398,
1/5/2415:2418,
1/5/2600:2610		No text annotation
J3_8B5L_0101/5/2418:2419,
1/5/2428:2432,
1/5/2599:2600		No text annotation
homologous
J3_8C3A_054
NA
J3_8B5L_0241/5/2441:2445,
1/5/2580:2581,
1/5/2585:2590		No text annotation
homologous
J3_8P9A_058
J3_08594.1
J3_8B5L_0111/5/3669:3671,
1/5/3802:3806,
1/5/3914:3919		No text annotation
geometric
J3_7A0S_009
J3_17460.1
J3_8B5L_0121/5/3819:3822,
1/5/3842:3857,
1/5/3901:3904		No text annotation
homologous
J3_8C3A_009
NA
J3_8B5L_0251/5/3974:3976,
1/5/4077:4088,
1/5/4116:4121		No text annotation
homologous
J3_8C3A_056
NA
J3_8B5L_0141/5/3987:3989,
1/5/4013:4015,
1/5/4024:4029		No text annotation
homologous
J3_5TBW_013
NA
J3_8B5L_0151/5/4209:4212,
1/5/4237:4239,
1/5/4253:4259		No text annotation
homologous
J3_5TBW_014
NA
J3_8B5L_0261/5/4496:4501,
1/5/4618:4622,
1/5/4675:4690		No text annotation
J3_8B5L_0161/5/4709:4711,
1/5/4725:4730,
1/5/4799:4802		No text annotation
J3_8B5L_0171/7/9:14,
1/7/65:66,
1/7/109:110		No text annotation
homologous
J3_5TBW_045
NA
J3_8B5L_0181/8/44:45,
1/8/58:64,
1/8/95:99		No text annotation
homologous
J3_8C3A_060
NA
J4_8B5L_0011/5/111:112,
1/5/278:283,
1/5/304:310,
1/5/327:330		No text annotation
homologous
J4_8P9A_012
J4_94698.1
J4_8B5L_0021/5/196:199,
1/5/215:222,
1/5/226:228,
1/5/240:244		No text annotation
J4_8B5L_0031/5/706:707,
1/5/855:861,
1/5/871:878,
1/5/1222:1228		No text annotation
J4_8B5L_0041/5/883:885,
1/5/985:987,
1/5/1126:1127,
1/5/1212:1217		No text annotation
J4_8B5L_0051/5/2208:2214,
1/5/2232:2234,
1/5/2667:2672,
1/5/3588:3589		No text annotation
J4_8B5L_0061/5/2249:2253,
1/5/2277:2282,
1/5/2381:2382,
1/5/2620:2627		No text annotation
homologous
J4_8C3A_004
NA
J4_8B5L_0071/5/2461:2462,
1/5/2480:2485,
1/5/2535:2541,
1/5/2561:2562		No text annotation
J4_8B5L_0081/5/3366:3370,
1/5/3382:3386,
1/5/3422:3426,
1/5/3553:3558		No text annotation
homologous
J4_8P9A_017
J4_78485.1
J4_8B5L_0091/5/3428:3430,
1/5/3484:3485,
1/5/3503:3512,
1/5/3546:3551		No text annotation
homologous
J4_8P9A_018
J4_42306.1
J4_8B5L_0101/5/3977:3981,
1/5/4035:4037,
1/5/4064:4065,
1/5/4074:4076		No text annotation
J4_8B5L_0111/5/3977:3981,
1/5/4035:4039,
1/5/4063:4065,
1/5/4074:4076		No text annotation
homologous
J4_8P9A_019
J4_59590.1
J4_8B5L_0121/5/4333:4336,
1/5/4366:4367,
1/5/4422:4424,
1/5/4458:4461		No text annotation
J5_8B5L_0011/5/19:21,
1/8/35:42,
1/8/101:106,
1/8/113:114,
1/8/136:138		No text annotation
homologous
J5_8P9A_010
J5_27223.1
J5_8B5L_0021/5/1279:1284,
1/5/1471:1474,
1/5/1613:1616,
1/5/2131:2133,
1/5/2188:2194		No text annotation
homologous
J5_8C3A_002
NA
J5_8B5L_0031/5/2698:2706,
1/5/2730:2731,
1/5/3345:3346,
1/5/3350:3358,
1/5/3567:3569		No text annotation
homologous
J5_8C3A_004
NA
J5_8B5L_0041/5/3635:3642,
1/5/4138:4146,
1/5/4190:4199,
1/5/4274:4280,
1/5/4298:4303		No text annotation
J5_8B5L_0051/5/3652:3655,
1/5/3934:3937,
1/5/3950:3951,
1/5/3973:3974,
1/5/4121:4127		No text annotation
homologous
J5_8P9A_015
J5_96125.1
J6_8B5L_0011/5/21:26,
1/5/57:67,
1/5/74:78,
1/5/105:109,
1/5/332:339,
1/8/33:35		No text annotation
J6_8B5L_0021/5/1296:1299,
1/5/1328:1332,
1/5/1339:1343,
1/5/1373:1376,
1/5/1419:1421,
1/5/1454:1459		No text annotation
J6_8B5L_0031/5/3652:3655,
1/5/3934:3937,
1/5/3950:3951,
1/5/3973:3976,
1/5/4077:4088,
1/5/4116:4127		No text annotation
J7_8B5L_0011/5/1621:1626,
1/5/1639:1640,
1/5/1791:1794,
1/5/1818:1823,
1/5/1834:1838,
1/5/2016:2017,
1/5/2121:2126		No text annotation

Problematic loops

#loop idProblemSequence
J3_8B5L_013No text annotation

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