HL_8B5L_014

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUCCCC

Length

6 nucleotides

Bulged bases

8B5L|1|5|U|1070, 8B5L|1|5|C|1073

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_014 not in the Motif Atlas

Geometric match to HL_6AAX_001

Geometric discrepancy: 0.2645

The information below is about HL_6AAX_001

Detailed Annotation

Mini UNCG

Broad Annotation

No text annotation

Motif group

HL_12626.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

8B5L|1|5|G|1069
8B5L|1|5|U|1070
8B5L|1|5|C|1071
8B5L|1|5|C|1072
8B5L|1|5|C|1073
8B5L|1|5|C|1074

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 7

5S ribosomal RNA; 5S rRNA

Chain D

Ribosomal_L18_c domain-containing protein

Chain I

Ribosomal protein L10