HL_8B5L_016
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- C(OMG)UCUUG(1MA)AAC(A2M)CG
- Length
- 14 nucleotides
- Bulged bases
- 8B5L|1|5|C|1269
- QA status
- Modified nucleotides: OMG, 1MA, A2M
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B5L_016 not in the Motif Atlas
- Geometric match to HL_4WF9_011
- Geometric discrepancy: 0.1597
- The information below is about HL_4WF9_011
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_75660.6
- Basepair signature
- cWW-F
- Number of instances in this motif group
- 21
Unit IDs
8B5L|1|5|C|1259
8B5L|1|5|OMG|1260
8B5L|1|5|U|1261
8B5L|1|5|C|1262
8B5L|1|5|U|1263
8B5L|1|5|U|1264
8B5L|1|5|G|1265
8B5L|1|5|1MA|1266
8B5L|1|5|A|1267
8B5L|1|5|A|1268
8B5L|1|5|C|1269
8B5L|1|5|A2M|1270
8B5L|1|5|C|1271
8B5L|1|5|G|1272
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain B
- Ribosomal protein L3
- Chain a
- 60S ribosomal protein L27a
- Chain e
- Ribosomal protein L32
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