HL_8B5L_017
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CUCGCACGAAAG
- Length
- 12 nucleotides
- Bulged bases
- 8B5L|1|5|C|1309, 8B5L|1|5|A|1315
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B5L_017 not in the Motif Atlas
- Geometric match to HL_2ZZM_002
- Geometric discrepancy: 0.1718
- The information below is about HL_2ZZM_002
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_13963.3
- Basepair signature
- cWW-F-F
- Number of instances in this motif group
- 4
Unit IDs
8B5L|1|5|C|1307
8B5L|1|5|U|1308
8B5L|1|5|C|1309
8B5L|1|5|G|1310
8B5L|1|5|C|1311
8B5L|1|5|A|1312
8B5L|1|5|C|1313
8B5L|1|5|G|1314
8B5L|1|5|A|1315
8B5L|1|5|A|1316
8B5L|1|5|A|1317
8B5L|1|5|G|1318
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain 8
- 5.8S ribosomal RNA; 5.8S rRNA
- Chain C
- 60S ribosomal protein L4
- Chain L
- 60S ribosomal protein L13
- Chain N
- Ribosomal protein L15
- Chain Y
- Ribosomal protein L26
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