HL_8B5L_019

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GGCGUCGCC

Length

9 nucleotides

Bulged bases

8B5L|1|5|G|1350, 8B5L|1|5|U|1365

QA status

Missing nucleotides

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_019 not in the Motif Atlas

Geometric match to HL_4V9F_003

Geometric discrepancy: 0.1364

The information below is about HL_4V9F_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.6

Basepair signature

cWW-F

Number of instances in this motif group

21

Unit IDs

8B5L|1|5|G|1347
8B5L|1|5|G|1348
8B5L|1|5|C|1349
8B5L|1|5|G|1350
8B5L|1|5|U|1365
8B5L|1|5|C|1366
8B5L|1|5|G|1367
8B5L|1|5|C|1368
8B5L|1|5|C|1369

Current chains

Chain 5

28S rRNA

Nearby chains