HL_8B5L_026

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGAAACG

Length

7 nucleotides

Bulged bases

8B5L|1|5|C|1707

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_026 not in the Motif Atlas

Geometric match to HL_3RG5_007

Geometric discrepancy: 0.2842

The information below is about HL_3RG5_007

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_34789.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

335

Unit IDs

8B5L|1|5|C|1702
8B5L|1|5|G|1703
8B5L|1|5|A|1704
8B5L|1|5|A|1705
8B5L|1|5|A|1706
8B5L|1|5|C|1707
8B5L|1|5|G|1708

Current chains

Chain 5

28S rRNA

Nearby chains