HL_8B5L_032
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- CAGUCGGCAGAGCGAGAAAGAGAGUGGCGCGGACGCUACG
- Length
- 40 nucleotides
- Bulged bases
- 8B5L|1|5|C|2033, 8B5L|1|5|U|2110, 8B5L|1|5|C|2112
- QA status
- Missing nucleotides
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- Not in a motif group
- Basepair signature
- Not available
- Number of instances in this motif group
- 0
Unit IDs
8B5L|1|5|C|2026
8B5L|1|5|A|2027
8B5L|1|5|G|2028
8B5L|1|5|U|2029
8B5L|1|5|C|2030
8B5L|1|5|G|2031
8B5L|1|5|G|2032
8B5L|1|5|C|2033
8B5L|1|5|A|2034
8B5L|1|5|G|2035
8B5L|1|5|A|2036
8B5L|1|5|G|2037
8B5L|1|5|C|2038
8B5L|1|5|G|2039
8B5L|1|5|A|2040
8B5L|1|5|G|2041
8B5L|1|5|A|2042
8B5L|1|5|A|2043
8B5L|1|5|A|2044
8B5L|1|5|G|2045
8B5L|1|5|A|2046
8B5L|1|5|G|2047
8B5L|1|5|A|2048
8B5L|1|5|G|2049
8B5L|1|5|U|2050
8B5L|1|5|G|2051
8B5L|1|5|G|2052
8B5L|1|5|C|2101
8B5L|1|5|G|2102
8B5L|1|5|C|2103
8B5L|1|5|G|2104
8B5L|1|5|G|2105
8B5L|1|5|A|2106
8B5L|1|5|C|2107
8B5L|1|5|G|2108
8B5L|1|5|C|2109
8B5L|1|5|U|2110
8B5L|1|5|A|2111
8B5L|1|5|C|2112
8B5L|1|5|G|2113
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain C
- 60S ribosomal protein L4
- Chain E
- 60S ribosomal protein L6
- Chain F
- 60S ribosomal protein L7
- Chain Q
- Ribosomal protein L18
- Chain b
- 60S ribosomal protein L29
- Chain r
- 60S ribosomal protein L28
Coloring options: