HL_8B5L_033

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGCGGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_033 not in the Motif Atlas

Homologous match to HL_8C3A_030

Geometric discrepancy: 0.0666

The information below is about HL_8C3A_030

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.2

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

360

Unit IDs

8B5L|1|5|C|2160
8B5L|1|5|G|2161
8B5L|1|5|C|2162
8B5L|1|5|G|2163
8B5L|1|5|G|2164
8B5L|1|5|G|2165

Current chains

Chain 5

28S rRNA

Nearby chains

Chain e

Ribosomal protein L32

Chain r

60S ribosomal protein L28