HL_8B5L_034

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

ACGAGAACU

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_034 not in the Motif Atlas

Homologous match to HL_8C3A_031

Geometric discrepancy: 0.1308

The information below is about HL_8C3A_031

Detailed Annotation

T-loop with 2 stacked bulged bases

Broad Annotation

T-loop

Motif group

HL_43993.1

Basepair signature

cWW-tWH-F-F-F-F-F

Number of instances in this motif group

141

Unit IDs

8B5L|1|5|A|2219
8B5L|1|5|C|2220
8B5L|1|5|G|2221
8B5L|1|5|A|2222
8B5L|1|5|G|2223
8B5L|1|5|A|2224
8B5L|1|5|A|2225
8B5L|1|5|C|2226
8B5L|1|5|U|2227

Current chains

Chain 5

28S rRNA

Nearby chains

Chain P

60S ribosomal protein L17

Chain R

Ribosomal protein L19

Chain d

60S ribosomal protein L31