HL_8B5L_038
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- GUUCAGAUCC
- Length
- 10 nucleotides
- Bulged bases
- 8B5L|1|5|U|2373, 8B5L|1|5|C|2374
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B5L_038 not in the Motif Atlas
- Geometric match to HL_5TBW_035
- Geometric discrepancy: 0.0836
- The information below is about HL_5TBW_035
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_35087.1
- Basepair signature
- cWW-tWH-F-F-F-F
- Number of instances in this motif group
- 7
Unit IDs
8B5L|1|5|G|2366
8B5L|1|5|U|2367
8B5L|1|5|U|2368
8B5L|1|5|C|2369
8B5L|1|5|A|2370
8B5L|1|5|G|2371
8B5L|1|5|A|2372
8B5L|1|5|U|2373
8B5L|1|5|C|2374
8B5L|1|5|C|2375
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain R
- Ribosomal protein L19
- Chain X
- Ribosomal_L23eN domain-containing protein
- Chain g
- 60S ribosomal protein L34
- Chain s
- Protein transport protein Sec61 subunit alpha isoform 1
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