HL_8B5L_041

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUUCUCUUU

Length

9 nucleotides

Bulged bases

8B5L|1|5|U|2474

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_041 not in the Motif Atlas

Homologous match to HL_8C3A_037

Geometric discrepancy: 0.1669

The information below is about HL_8C3A_037

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01927.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

4

Unit IDs

8B5L|1|5|G|2467
8B5L|1|5|U|2468
8B5L|1|5|U|2469
8B5L|1|5|C|2470
8B5L|1|5|U|2471
8B5L|1|5|C|2472
8B5L|1|5|U|2473
8B5L|1|5|U|2474
8B5L|1|5|U|2475

Current chains

Chain 5

28S rRNA

Nearby chains

Chain R

Ribosomal protein L19

Chain U

60S ribosomal protein L22