HL_8B5L_052

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

G(A2M)AGAAA(PSU)UC

Length

10 nucleotides

Bulged bases

None detected

QA status

Modified nucleotides: A2M, PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_052 not in the Motif Atlas

Geometric match to HL_8KAL_008

Geometric discrepancy: 0.333

The information below is about HL_8KAL_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75293.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8B5L|1|5|G|3454
8B5L|1|5|A2M|3455
8B5L|1|5|A|3456
8B5L|1|5|G|3457
8B5L|1|5|A|3458
8B5L|1|5|A|3459
8B5L|1|5|A|3460
8B5L|1|5|PSU|3461
8B5L|1|5|U|3462
8B5L|1|5|C|3463

Current chains

Chain 5

28S rRNA

Nearby chains

Chain i

60S ribosomal protein L36

Chain o

60S ribosomal protein L36a-like