HL_8B5L_059

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GACAGAAAC

Length

9 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_059 not in the Motif Atlas

Homologous match to HL_8C3A_057

Geometric discrepancy: 0.3272

The information below is about HL_8C3A_057

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_72777.1

Basepair signature

cWW-F-cWH-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8B5L|1|5|G|3996
8B5L|1|5|A|3997
8B5L|1|5|C|3998
8B5L|1|5|A|3999
8B5L|1|5|G|4000
8B5L|1|5|A|4001
8B5L|1|5|A|4002
8B5L|1|5|A|4003
8B5L|1|5|C|4004

Current chains

Chain 5

28S rRNA

Nearby chains

Chain J

60S ribosomal protein L11