HL_8B5L_063
3D structure
- PDB id
- 8B5L (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.86 Å
Loop
- Sequence
- UUU(E6G)GGUUUUA
- Length
- 11 nucleotides
- Bulged bases
- 8B5L|1|5|U|4100
- QA status
- Modified nucleotides: E6G
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B5L_063 not in the Motif Atlas
- Geometric match to HL_8H1B_001
- Geometric discrepancy: 0.2653
- The information below is about HL_8H1B_001
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_86621.1
- Basepair signature
- cWW-F-F-F-F-F
- Number of instances in this motif group
- 9
Unit IDs
8B5L|1|5|U|4098
8B5L|1|5|U|4099
8B5L|1|5|U|4100
8B5L|1|5|E6G|4101
8B5L|1|5|G|4102
8B5L|1|5|G|4103
8B5L|1|5|U|4104
8B5L|1|5|U|4105
8B5L|1|5|U|4106
8B5L|1|5|U|4107
8B5L|1|5|A|4108
Current chains
- Chain 5
- 28S rRNA
Nearby chains
- Chain L
- 60S ribosomal protein L13
- Chain a
- 60S ribosomal protein L27a
- Chain i
- 60S ribosomal protein L36
- Chain o
- 60S ribosomal protein L36a-like
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