HL_8B5L_071

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

CGGAAAGGGG

Length

10 nucleotides

Bulged bases

8B5L|1|5|A|4649, 8B5L|1|5|A|4650, 8B5L|1|5|G|4653

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_071 not in the Motif Atlas

Geometric match to HL_2Y9H_003

Geometric discrepancy: 0.1666

The information below is about HL_2Y9H_003

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_75660.7

Basepair signature

cWW-F

Number of instances in this motif group

22

Unit IDs

8B5L|1|5|C|4645
8B5L|1|5|G|4646
8B5L|1|5|G|4647
8B5L|1|5|A|4648
8B5L|1|5|A|4649
8B5L|1|5|A|4650
8B5L|1|5|G|4651
8B5L|1|5|G|4652
8B5L|1|5|G|4653
8B5L|1|5|G|4654

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain O

60S ribosomal protein L13a