HL_8B5L_072

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

GUAGACGAC

Length

9 nucleotides

Bulged bases

8B5L|1|5|U|4715

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B5L_072 not in the Motif Atlas

Homologous match to HL_8C3A_071

Geometric discrepancy: 0.105

The information below is about HL_8C3A_071

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_64690.4

Basepair signature

cWW-cSW-F-F-F-cWW

Number of instances in this motif group

9

Unit IDs

8B5L|1|5|G|4714
8B5L|1|5|U|4715
8B5L|1|5|A|4716
8B5L|1|5|G|4717
8B5L|1|5|A|4718
8B5L|1|5|C|4719
8B5L|1|5|G|4720
8B5L|1|5|A|4721
8B5L|1|5|C|4722

Current chains

Chain 5

28S rRNA

Nearby chains

Chain B

Ribosomal protein L3

Chain P

60S ribosomal protein L17

Chain d

60S ribosomal protein L31