HL_8B5L_082

3D structure

PDB id

8B5L (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of ribosome-Sec61-TRAP (TRanslocon Associated Protein) translocon complex

Experimental method

ELECTRON MICROSCOPY

Resolution

2.86 Å

Loop

Sequence

UCGCACGAAA

Length

10 nucleotides

Bulged bases

8B5L|1|5|C|1309, 8B5L|1|5|A|1315

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

Not in a motif group

Basepair signature

Not available

Number of instances in this motif group

0

Unit IDs

8B5L|1|5|U|1308
8B5L|1|5|C|1309
8B5L|1|5|G|1310
8B5L|1|5|C|1311
8B5L|1|5|A|1312
8B5L|1|5|C|1313
8B5L|1|5|G|1314
8B5L|1|5|A|1315
8B5L|1|5|A|1316
8B5L|1|5|A|1317

Current chains

Chain 5

28S rRNA

Nearby chains

Chain 8

5.8S ribosomal RNA; 5.8S rRNA

Chain C

60S ribosomal protein L4

Chain L

60S ribosomal protein L13

Chain N

Ribosomal protein L15

Chain Y

Ribosomal protein L26