HL_8B7Y_008

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_008 not in the Motif Atlas

Homologous match to HL_5J7L_008

Geometric discrepancy: 0.0897

The information below is about HL_5J7L_008

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.3

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8B7Y|1|C|A|320
8B7Y|1|C|A|321
8B7Y|1|C|C|322
8B7Y|1|C|U|323
8B7Y|1|C|G|324
8B7Y|1|C|A|325
8B7Y|1|C|G|326
8B7Y|1|C|A|327
8B7Y|1|C|C|328
8B7Y|1|C|A|329
8B7Y|1|C|C|330
8B7Y|1|C|G|331
8B7Y|1|C|G|332
8B7Y|1|C|U|333

Current chains

Chain C

16S ribosomal RNA

Nearby chains

Chain u

30S ribosomal protein S16

Chain y

30S ribosomal protein S20