HL_8B7Y_059

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUUAGAAGCAG

Length

11 nucleotides

Bulged bases

8B7Y|1|I|A|1070

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_059 not in the Motif Atlas

Homologous match to HL_6PRV_001

Geometric discrepancy: 0.2749

The information below is about HL_6PRV_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_20174.1

Basepair signature

cWW-F-F-F-F-F-F-F-F

Number of instances in this motif group

5

Unit IDs

8B7Y|1|I|C|1064
8B7Y|1|I|U|1065
8B7Y|1|I|U|1066
8B7Y|1|I|A|1067
8B7Y|1|I|G|1068
8B7Y|1|I|A|1069
8B7Y|1|I|A|1070
8B7Y|1|I|G|1071
8B7Y|1|I|C|1072
8B7Y|1|I|A|1073
8B7Y|1|I|G|1074

Current chains

Chain I

23S ribosomal RNA

Nearby chains