HL_8B7Y_060

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

GCGUAAUAGC

Length

10 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_060 not in the Motif Atlas

Geometric match to HL_6CF2_001

Geometric discrepancy: 0.3816

The information below is about HL_6CF2_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_87553.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8B7Y|1|I|G|1091
8B7Y|1|I|C|1092
8B7Y|1|I|G|1093
8B7Y|1|I|U|1094
8B7Y|1|I|A|1095
8B7Y|1|I|A|1096
8B7Y|1|I|U|1097
8B7Y|1|I|A|1098
8B7Y|1|I|G|1099
8B7Y|1|I|C|1100

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L6

Chain m

50S ribosomal protein L36