HL_8B7Y_076

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UUUAUUAAAAA

Length

11 nucleotides

Bulged bases

8B7Y|1|I|A|1780, 8B7Y|1|I|U|1781, 8B7Y|1|I|U|1782, 8B7Y|1|I|A|1786

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_076 not in the Motif Atlas

Homologous match to HL_5J7L_178

Geometric discrepancy: 0.0943

The information below is about HL_5J7L_178

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_01962.2

Basepair signature

cWW-tWH-tWH-F

Number of instances in this motif group

6

Unit IDs

8B7Y|1|I|U|1777
8B7Y|1|I|U|1778
8B7Y|1|I|U|1779
8B7Y|1|I|A|1780
8B7Y|1|I|U|1781
8B7Y|1|I|U|1782
8B7Y|1|I|A|1783
8B7Y|1|I|A|1784
8B7Y|1|I|A|1785
8B7Y|1|I|A|1786
8B7Y|1|I|A|1787

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain K

50S ribosomal protein L2

Chain k

50S ribosomal protein L34

Chain z

Myxovalargin B