HL_8B7Y_079

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

G(PSU)AACUA(PSU)AAC

Length

11 nucleotides

Bulged bases

8B7Y|1|I|A|1913

QA status

Modified nucleotides: PSU

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_079 not in the Motif Atlas

Homologous match to HL_5J7L_181

Geometric discrepancy: 0.0577

The information below is about HL_5J7L_181

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_25847.2

Basepair signature

cWW-F-cSH-tHW-F-F-F

Number of instances in this motif group

3

Unit IDs

8B7Y|1|I|G|1910
8B7Y|1|I|PSU|1911
8B7Y|1|I|A|1912
8B7Y|1|I|A|1913
8B7Y|1|I|C|1914
8B7Y|1|I|U|1915
8B7Y|1|I|A|1916
8B7Y|1|I|PSU|1917
8B7Y|1|I|A|1918
8B7Y|1|I|A|1919
8B7Y|1|I|C|1920

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain C

Small subunit ribosomal RNA; SSU rRNA

Chain n

Transfer RNA; tRNA