HL_8B7Y_080
3D structure
- PDB id
- 8B7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GGUAAGUUC
- Length
- 9 nucleotides
- Bulged bases
- 8B7Y|1|I|U|1955
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B7Y_080 not in the Motif Atlas
- Homologous match to HL_5J7L_182
- Geometric discrepancy: 0.0827
- The information below is about HL_5J7L_182
- Detailed Annotation
- No text annotation
- Broad Annotation
- No text annotation
- Motif group
- HL_20167.2
- Basepair signature
- cWW-F-F-F-F-F-F
- Number of instances in this motif group
- 10
Unit IDs
8B7Y|1|I|G|1949
8B7Y|1|I|G|1950
8B7Y|1|I|U|1951
8B7Y|1|I|A|1952
8B7Y|1|I|A|1953
8B7Y|1|I|G|1954
8B7Y|1|I|U|1955
8B7Y|1|I|U|1956
8B7Y|1|I|C|1957
Current chains
- Chain I
- 23S ribosomal RNA
Nearby chains
- Chain C
- Small subunit ribosomal RNA; SSU rRNA
- Chain S
- 50S ribosomal protein L14
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