HL_8B7Y_085

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUAAAGAGUAACG

Length

13 nucleotides

Bulged bases

8B7Y|1|I|A|2268, 8B7Y|1|I|C|2275

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_085 not in the Motif Atlas

Homologous match to HL_7RQB_054

Geometric discrepancy: 0.0616

The information below is about HL_7RQB_054

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_19870.6

Basepair signature

cWW-tSH-tHH-tWW-F-F-F

Number of instances in this motif group

7

Unit IDs

8B7Y|1|I|C|2264
8B7Y|1|I|U|2265
8B7Y|1|I|A|2266
8B7Y|1|I|A|2267
8B7Y|1|I|A|2268
8B7Y|1|I|G|2269
8B7Y|1|I|A|2270
8B7Y|1|I|G|2271
8B7Y|1|I|U|2272
8B7Y|1|I|A|2273
8B7Y|1|I|A|2274
8B7Y|1|I|C|2275
8B7Y|1|I|G|2276

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain U

50S ribosomal protein L16

Chain e

50S ribosomal protein L27