HL_8B7Y_092

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

UGAAGUAG

Length

8 nucleotides

Bulged bases

8B7Y|1|I|G|2529

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_092 not in the Motif Atlas

Homologous match to HL_7RQB_061

Geometric discrepancy: 0.1097

The information below is about HL_7RQB_061

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_91104.1

Basepair signature

cWW-F

Number of instances in this motif group

12

Unit IDs

8B7Y|1|I|U|2528
8B7Y|1|I|G|2529
8B7Y|1|I|A|2530
8B7Y|1|I|A|2531
8B7Y|1|I|G|2532
8B7Y|1|I|U|2533
8B7Y|1|I|A|2534
8B7Y|1|I|G|2535

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L6

Chain m

50S ribosomal protein L36