HL_8B7Y_097

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8B7Y|1|I|G|2751, 8B7Y|1|I|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_097 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.0769

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8B7Y|1|I|C|2745
8B7Y|1|I|U|2746
8B7Y|1|I|G|2747
8B7Y|1|I|A|2748
8B7Y|1|I|A|2749
8B7Y|1|I|A|2750
8B7Y|1|I|G|2751
8B7Y|1|I|C|2752
8B7Y|1|I|A|2753
8B7Y|1|I|U|2754
8B7Y|1|I|C|2755
8B7Y|1|I|U|2756
8B7Y|1|I|A|2757
8B7Y|1|I|A|2758
8B7Y|1|I|G|2759

Current chains

Chain I

23S ribosomal RNA

Nearby chains

Chain O

50S ribosomal protein L6

Chain R

50S ribosomal protein L13

Chain m

50S ribosomal protein L36