HL_8B7Y_105
3D structure
- PDB id
- 8B7Y (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 3 Å
Loop
- Sequence
- GUUCAAAUC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8B7Y_105 not in the Motif Atlas
- Homologous match to HL_4V9Q_215
- Geometric discrepancy: 0.2161
- The information below is about HL_4V9Q_215
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_33597.1
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 96
Unit IDs
8B7Y|1|n|G|54
8B7Y|1|n|U|55
8B7Y|1|n|U|56
8B7Y|1|n|C|57
8B7Y|1|n|A|58
8B7Y|1|n|A|59
8B7Y|1|n|A|60
8B7Y|1|n|U|61
8B7Y|1|n|C|62
Current chains
- Chain n
- P-tRNA fMet
Nearby chains
- Chain I
- Large subunit ribosomal RNA; LSU rRNA
- Chain U
- 50S ribosomal protein L16
Coloring options: