HL_8B7Y_107

3D structure

PDB id

8B7Y (explore in PDB, NAKB, or RNA 3D Hub)

Description

Cryo-EM structure of the E.coli 70S ribosome in complex with the antibiotic Myxovalargin B.

Experimental method

ELECTRON MICROSCOPY

Resolution

3 Å

Loop

Sequence

ACUACGGU

Length

8 nucleotides

Bulged bases

8B7Y|1|I|A|1535

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8B7Y_107 not in the Motif Atlas

Geometric match to HL_5TBW_021

Geometric discrepancy: 0.2297

The information below is about HL_5TBW_021

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_56443.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

7

Unit IDs

8B7Y|1|I|A|1532
8B7Y|1|I|C|1533
8B7Y|1|I|U|1534
8B7Y|1|I|A|1535
8B7Y|1|I|C|1536
8B7Y|1|I|G|1537
8B7Y|1|I|G|1538
8B7Y|1|I|U|1539

Current chains

Chain I

23S ribosomal RNA

Nearby chains