HL_8BF7_006

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

GAAACAUC

Length

8 nucleotides

Bulged bases

8BF7|1|0|A|196

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BF7_006 not in the Motif Atlas

Geometric match to HL_5TBW_001

Geometric discrepancy: 0.1326

The information below is about HL_5TBW_001

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_36430.1

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8BF7|1|0|G|194
8BF7|1|0|A|195
8BF7|1|0|A|196
8BF7|1|0|A|197
8BF7|1|0|C|198
8BF7|1|0|A|199
8BF7|1|0|U|200
8BF7|1|0|C|201

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain U

50S ribosomal protein L28