3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
GUGAAAAGC
Length
9 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BF7_030 not in the Motif Atlas
Homologous match to HL_5J7L_165
Geometric discrepancy: 0.1612
The information below is about HL_5J7L_165
Detailed Annotation
T-loop with 2 stacked bulged bases
Broad Annotation
T-loop
Motif group
HL_28252.8
Basepair signature
cWW-tWH-F-F-F-F-F
Number of instances in this motif group
140

Unit IDs

8BF7|1|0|G|1281
8BF7|1|0|U|1282
8BF7|1|0|G|1283
8BF7|1|0|A|1284
8BF7|1|0|A|1285
8BF7|1|0|A|1286
8BF7|1|0|A|1287
8BF7|1|0|G|1288
8BF7|1|0|C|1289

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain K
50S ribosomal protein L17
Chain P
50S ribosomal protein L22

Coloring options:


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