3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
GUGAAGAUGC
Length
10 nucleotides
Bulged bases
8BF7|1|0|A|2030, 8BF7|1|0|A|2031, 8BF7|1|0|G|2032
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BF7_048 not in the Motif Atlas
Homologous match to HL_4WF9_047
Geometric discrepancy: 0.1499
The information below is about HL_4WF9_047
Detailed Annotation
No text annotation
Broad Annotation
No text annotation
Motif group
HL_61996.2
Basepair signature
cWW-tWH-F-F-F
Number of instances in this motif group
8

Unit IDs

8BF7|1|0|G|2027
8BF7|1|0|U|2028
8BF7|1|0|G|2029
8BF7|1|0|A|2030
8BF7|1|0|A|2031
8BF7|1|0|G|2032
8BF7|1|0|A|2033
8BF7|1|0|U|2034
8BF7|1|0|G|2035
8BF7|1|0|C|2036

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain B
50S ribosomal protein L3
Chain a
50S ribosomal protein L32

Coloring options:


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