HL_8BF7_051

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUGGGGCGG

Length

9 nucleotides

Bulged bases

8BF7|1|0|G|2250

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BF7_051 not in the Motif Atlas

Homologous match to HL_7A0S_052

Geometric discrepancy: 0.1222

The information below is about HL_7A0S_052

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_85367.2

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

11

Unit IDs

8BF7|1|0|C|2248
8BF7|1|0|U|2249
8BF7|1|0|G|2250
8BF7|1|0|G|2251
8BF7|1|0|G|2252
8BF7|1|0|G|2253
8BF7|1|0|C|2254
8BF7|1|0|G|2255
8BF7|1|0|G|2256

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain 4

Transfer RNA; tRNA

Chain J

50S ribosomal protein L16

Chain T

50S ribosomal protein L27