HL_8BF7_055

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UGACGG

Length

6 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BF7_055 not in the Motif Atlas

Homologous match to HL_5J7L_190

Geometric discrepancy: 0.1178

The information below is about HL_5J7L_190

Detailed Annotation

GNRA

Broad Annotation

No text annotation

Motif group

HL_37824.8

Basepair signature

cWW-F-F-F-F

Number of instances in this motif group

352

Unit IDs

8BF7|1|0|U|2356
8BF7|1|0|G|2357
8BF7|1|0|A|2358
8BF7|1|0|C|2359
8BF7|1|0|G|2360
8BF7|1|0|G|2361

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain I

50S ribosomal protein L15

Chain T

50S ribosomal protein L27

Chain d

50S ribosomal protein L35