HL_8BF7_057

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8BF7|1|0|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BF7_057 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1235

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8BF7|1|0|U|2404
8BF7|1|0|G|2405
8BF7|1|0|A|2406
8BF7|1|0|A|2407
8BF7|1|0|U|2408
8BF7|1|0|G|2409
8BF7|1|0|G|2410
8BF7|1|0|A|2411
8BF7|1|0|A|2412
8BF7|1|0|G|2413

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain I

50S ribosomal protein L15