3D structure

PDB id
8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
Description
Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
Experimental method
ELECTRON MICROSCOPY
Resolution
2.33 Å

Loop

Sequence
CGAGAG
Length
6 nucleotides
Bulged bases
None detected
QA status
Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.
R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
R3DMCS Rfam
HL_8BF7_062 not in the Motif Atlas
Homologous match to HL_5J7L_197
Geometric discrepancy: 0.129
The information below is about HL_5J7L_197
Detailed Annotation
GNRA
Broad Annotation
No text annotation
Motif group
HL_37824.7
Basepair signature
cWW-F-F-F-F
Number of instances in this motif group
349

Unit IDs

8BF7|1|0|C|2658
8BF7|1|0|G|2659
8BF7|1|0|A|2660
8BF7|1|0|G|2661
8BF7|1|0|A|2662
8BF7|1|0|G|2663

Current chains

Chain 0
23S rRNA RRLG-RRNA

Nearby chains

Chain E
50S ribosomal protein L6

Coloring options:


Copyright 2025 BGSU RNA group. Page generated in 1.0207 s