HL_8BF7_064

3D structure

PDB id

8BF7 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.33 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8BF7|1|0|G|2751, 8BF7|1|0|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BF7_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1198

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8BF7|1|0|C|2745
8BF7|1|0|U|2746
8BF7|1|0|G|2747
8BF7|1|0|A|2748
8BF7|1|0|A|2749
8BF7|1|0|A|2750
8BF7|1|0|G|2751
8BF7|1|0|C|2752
8BF7|1|0|A|2753
8BF7|1|0|U|2754
8BF7|1|0|C|2755
8BF7|1|0|U|2756
8BF7|1|0|A|2757
8BF7|1|0|A|2758
8BF7|1|0|G|2759

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13

Chain e

50S ribosomal protein L36