HL_8BF7_105
3D structure
- PDB id
- 8BF7 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAA mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.33 Å
Loop
- Sequence
- ACU(U8U)UU(T6A)AU
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Modified nucleotides: U8U, T6A
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BF7_105 not in the Motif Atlas
- Homologous match to HL_7U2I_104
- Geometric discrepancy: 0.1591
- The information below is about HL_7U2I_104
- Detailed Annotation
- tRNA anticodon loop
- Broad Annotation
- Anticodon loop
- Motif group
- HL_06059.6
- Basepair signature
- cWW-F-F-F-F-F-F-F
- Number of instances in this motif group
- 51
Unit IDs
8BF7|1|5|A|31
8BF7|1|5|C|32
8BF7|1|5|U|33
8BF7|1|5|U8U|34
8BF7|1|5|U|35
8BF7|1|5|U|36
8BF7|1|5|T6A|37
8BF7|1|5|A|38
8BF7|1|5|U|39
Current chains
- Chain 5
- Dipeptidyl A-site tRNA(Lys)
Nearby chains
- Chain 0
- Large subunit ribosomal RNA; LSU rRNA
- Chain 2
- Small subunit ribosomal RNA; SSU rRNA
- Chain 3
- mRNA
- Chain p
- 30S ribosomal protein S12
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