HL_8BGH_013

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

GGACCAUC

Length

8 nucleotides

Bulged bases

8BGH|1|0|G|411

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGH_013 not in the Motif Atlas

Homologous match to HL_7A0S_014

Geometric discrepancy: 0.1403

The information below is about HL_7A0S_014

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_30680.4

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

15

Unit IDs

8BGH|1|0|G|410
8BGH|1|0|G|411
8BGH|1|0|A|412
8BGH|1|0|C|413
8BGH|1|0|C|414
8BGH|1|0|A|415
8BGH|1|0|U|416
8BGH|1|0|C|417

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains