HL_8BGH_028

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CUUAUG

Length

6 nucleotides

Bulged bases

8BGH|1|0|A|1175

QA status

Unknown status

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGH_028 not in the Motif Atlas

Geometric match to HL_4V88_198

Geometric discrepancy: 0.2389

The information below is about HL_4V88_198

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_71121.1

Basepair signature

cWW-F

Number of instances in this motif group

24

Unit IDs

8BGH|1|0|C|1172
8BGH|1|0|U|1173
8BGH|1|0|U|1174
8BGH|1|0|A|1175
8BGH|1|0|U|1176
8BGH|1|0|G|1177

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain I

50S ribosomal protein L15