HL_8BGH_038

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CGACACAG

Length

8 nucleotides

Bulged bases

8BGH|1|0|A|1614, 8BGH|1|0|A|1616, 8BGH|1|0|A|1618

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGH_038 not in the Motif Atlas

Homologous match to HL_4WF9_038

Geometric discrepancy: 0.1279

The information below is about HL_4WF9_038

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_28592.1

Basepair signature

cWW-F-F-F

Number of instances in this motif group

11

Unit IDs

8BGH|1|0|C|1612
8BGH|1|0|G|1613
8BGH|1|0|A|1614
8BGH|1|0|C|1615
8BGH|1|0|A|1616
8BGH|1|0|C|1617
8BGH|1|0|A|1618
8BGH|1|0|G|1619

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain P

50S ribosomal protein L22

Chain c

50S ribosomal protein L34