HL_8BGH_064

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8BGH|1|0|G|2751, 8BGH|1|0|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGH_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1394

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8BGH|1|0|C|2745
8BGH|1|0|U|2746
8BGH|1|0|G|2747
8BGH|1|0|A|2748
8BGH|1|0|A|2749
8BGH|1|0|A|2750
8BGH|1|0|G|2751
8BGH|1|0|C|2752
8BGH|1|0|A|2753
8BGH|1|0|U|2754
8BGH|1|0|C|2755
8BGH|1|0|U|2756
8BGH|1|0|A|2757
8BGH|1|0|A|2758
8BGH|1|0|G|2759

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain e

50S ribosomal protein L36