HL_8BGH_110

3D structure

PDB id

8BGH (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing acylated tRNA(iMet) in the P-site and AAA mRNA codon in the A-site after uncompleted di-peptide formation

Experimental method

ELECTRON MICROSCOPY

Resolution

2.88 Å

Loop

Sequence

UGCAAUGG

Length

8 nucleotides

Bulged bases

None detected

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BGH_110 not in the Motif Atlas

Homologous match to HL_5J7L_189

Geometric discrepancy: 0.1745

The information below is about HL_5J7L_189

Detailed Annotation

Pseudoknot geometry

Broad Annotation

No text annotation

Motif group

HL_93324.4

Basepair signature

cWW-F-F-F-F-F-F

Number of instances in this motif group

24

Unit IDs

8BGH|1|0|U|2324
8BGH|1|0|G|2325
8BGH|1|0|C|2326
8BGH|1|0|A|2327
8BGH|1|0|A|2328
8BGH|1|0|U|2329
8BGH|1|0|G|2330
8BGH|1|0|G|2331

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain D

50S ribosomal protein L5

Chain T

50S ribosomal protein L27