HL_8BH4_030
3D structure
- PDB id
- 8BH4 (explore in PDB, NAKB, or RNA 3D Hub)
- Description
- Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site
- Experimental method
- ELECTRON MICROSCOPY
- Resolution
- 2.62 Å
Loop
- Sequence
- GUGAAAAGC
- Length
- 9 nucleotides
- Bulged bases
- None detected
- QA status
- Valid loop
Sequence variability
-
If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.
- R3DSVS
Structural variability across Equivalence Class
-
The link below will give the loop's structural variability across the equivalence class for this chain.
- R3DMCS EC
Structural variability across Rfam
-
If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.
- R3DMCS Rfam
- HL_8BH4_030 not in the Motif Atlas
- Homologous match to HL_5J7L_165
- Geometric discrepancy: 0.1662
- The information below is about HL_5J7L_165
- Detailed Annotation
- T-loop with 2 stacked bulged bases
- Broad Annotation
- T-loop
- Motif group
- HL_28252.9
- Basepair signature
- cWW-tWH-F-F-F-F-F
- Number of instances in this motif group
- 141
Unit IDs
8BH4|1|0|G|1281
8BH4|1|0|U|1282
8BH4|1|0|G|1283
8BH4|1|0|A|1284
8BH4|1|0|A|1285
8BH4|1|0|A|1286
8BH4|1|0|A|1287
8BH4|1|0|G|1288
8BH4|1|0|C|1289
Current chains
- Chain 0
- 23S rRNA RRLG-RRNA
Nearby chains
- Chain K
- 50S ribosomal protein L17
- Chain P
- 50S ribosomal protein L22
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