HL_8BH4_034

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CGACGGUUG

Length

9 nucleotides

Bulged bases

8BH4|1|0|A|1453, 8BH4|1|0|C|1454

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH4_034 not in the Motif Atlas

Geometric match to HL_5J7L_169

Geometric discrepancy: 0.1342

The information below is about HL_5J7L_169

Detailed Annotation

Mini UNCG with extended bulge

Broad Annotation

Mini UNCG with extended bulge

Motif group

HL_22622.1

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

2

Unit IDs

8BH4|1|0|C|1451
8BH4|1|0|G|1452
8BH4|1|0|A|1453
8BH4|1|0|C|1454
8BH4|1|0|G|1455
8BH4|1|0|G|1456
8BH4|1|0|U|1457
8BH4|1|0|U|1458
8BH4|1|0|G|1459

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain K

50S ribosomal protein L17