HL_8BH4_057

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

UGAAUGGAAG

Length

10 nucleotides

Bulged bases

8BH4|1|0|A|2406

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH4_057 not in the Motif Atlas

Homologous match to HL_5J7L_192

Geometric discrepancy: 0.1299

The information below is about HL_5J7L_192

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_53454.2

Basepair signature

cWW-tSH-F-F-F-F-F

Number of instances in this motif group

6

Unit IDs

8BH4|1|0|U|2404
8BH4|1|0|G|2405
8BH4|1|0|A|2406
8BH4|1|0|A|2407
8BH4|1|0|U|2408
8BH4|1|0|G|2409
8BH4|1|0|G|2410
8BH4|1|0|A|2411
8BH4|1|0|A|2412
8BH4|1|0|G|2413

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain I

50S ribosomal protein L15