HL_8BH4_064

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

CUGAAAGCAUCUAAG

Length

15 nucleotides

Bulged bases

8BH4|1|0|G|2751, 8BH4|1|0|C|2755

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH4_064 not in the Motif Atlas

Homologous match to HL_5J7L_199

Geometric discrepancy: 0.1282

The information below is about HL_5J7L_199

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_74055.2

Basepair signature

cWW-tWH-cWH-tSH-tHW-tHW-tSW

Number of instances in this motif group

7

Unit IDs

8BH4|1|0|C|2745
8BH4|1|0|U|2746
8BH4|1|0|G|2747
8BH4|1|0|A|2748
8BH4|1|0|A|2749
8BH4|1|0|A|2750
8BH4|1|0|G|2751
8BH4|1|0|C|2752
8BH4|1|0|A|2753
8BH4|1|0|U|2754
8BH4|1|0|C|2755
8BH4|1|0|U|2756
8BH4|1|0|A|2757
8BH4|1|0|A|2758
8BH4|1|0|G|2759

Current chains

Chain 0

23S rRNA RRLG-RRNA

Nearby chains

Chain E

50S ribosomal protein L6

Chain G

50S ribosomal protein L13

Chain e

50S ribosomal protein L36