HL_8BH4_093

3D structure

PDB id

8BH4 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Elongating E. coli 70S ribosome containing deacylated tRNA(iMet) in the P-site and AAm6A mRNA codon with cognate dipeptidyl-tRNA(Lys) in the A-site

Experimental method

ELECTRON MICROSCOPY

Resolution

2.62 Å

Loop

Sequence

GUUAAGUC

Length

8 nucleotides

Bulged bases

8BH4|1|2|G|1094

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH4_093 not in the Motif Atlas

Homologous match to HL_4LFB_025

Geometric discrepancy: 0.1538

The information below is about HL_4LFB_025

Detailed Annotation

T-loop related

Broad Annotation

T-loop

Motif group

HL_77436.5

Basepair signature

cWW-F-F-F-F-F

Number of instances in this motif group

23

Unit IDs

8BH4|1|2|G|1089
8BH4|1|2|U|1090
8BH4|1|2|U|1091
8BH4|1|2|A|1092
8BH4|1|2|A|1093
8BH4|1|2|G|1094
8BH4|1|2|U|1095
8BH4|1|2|C|1096

Current chains

Chain 2

16S rRNA RRSB-RRNA

Nearby chains

Chain f

30S ribosomal protein S2

Chain k

30S ribosomal protein S7

Chain y

30S ribosomal protein S21