HL_8BH6_008

3D structure

PDB id

8BH6 (explore in PDB, NAKB, or RNA 3D Hub)

Description

Mature 30S ribosomal subunit from Staphylococcus aureus

Experimental method

ELECTRON MICROSCOPY

Resolution

3.7 Å

Loop

Sequence

AACUGAGACACGGU

Length

14 nucleotides

Bulged bases

8BH6|1|a|C|338, 8BH6|1|a|G|339

QA status

Valid loop

Sequence variability

If this chain is mapped to an Rfam alignment, the link below will give its sequence variability.

R3DSVS

Structural variability across Equivalence Class

The link below will give the loop's structural variability across the equivalence class for this chain.

R3DMCS EC

Structural variability across Rfam

If this chain is mapped to an Rfam alignment, the link below will give the loop's structural variability between chains mapped to the same Rfam family.

R3DMCS Rfam

HL_8BH6_008 not in the Motif Atlas

Homologous match to HL_6CZR_079

Geometric discrepancy: 0.1928

The information below is about HL_6CZR_079

Detailed Annotation

No text annotation

Broad Annotation

No text annotation

Motif group

HL_81205.2

Basepair signature

cWW-cWW-tWH-F-tWH-F-F-F-F-F

Number of instances in this motif group

3

Unit IDs

8BH6|1|a|A|328
8BH6|1|a|A|329
8BH6|1|a|C|330
8BH6|1|a|U|331
8BH6|1|a|G|332
8BH6|1|a|A|333
8BH6|1|a|G|334
8BH6|1|a|A|335
8BH6|1|a|C|336
8BH6|1|a|A|337
8BH6|1|a|C|338
8BH6|1|a|G|339
8BH6|1|a|G|340
8BH6|1|a|U|341

Current chains

Chain a

16S ribosomal RNA

Nearby chains

Chain p

30S ribosomal protein S16

Chain t

30S ribosomal protein S20